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Staff, Systems Design – System Architect

ThermoFisher Scientific

Pleasanton, CAFull-time$136–170K/yrSeen 3 days agoSeen in employer's feed 3 days ago

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At a glance

Compensation
$136–170K/yr
Location
Pleasanton, CA
Schedule
Full-time
Work Authorization
Not specified

Olive lists jobs from US employers, including remote roles you can work from the United States.

Job overview

The Staff, Systems Design – System Architect provides architecture and technical leadership for embedded software coordinating complex scientific instrument subsystems. The role defines and evolves software architecture for instruments and laboratory automation platforms, partnering across engineering and product teams from concept through release and sustaining support. It also guides technical decisions, establishes reusable standards, mentors engineers, and shapes software platforms across products.

Skills & qualifications

RequiredNice to have

Skills

Embedded Software ArchitectureC++PythonModular Software DesignSoftware Component DesignService Interface DesignCommunication LayersDiagnosticsError HandlingState ManagementEmbedded Systems IntegrationHardware IntegrationReal-Time Operating EnvironmentsAutomated Test FrameworksIntegration TestingSimulation EnvironmentsHardware-in-the-Loop TestingSoftware Design PrinciplesAPI DesignVersion ControlCode ReviewContinuous IntegrationAutomated TestingRelease ManagementTechnical LeadershipCross-Functional CollaborationCommunicationProblem-SolvingMentoringRegulated ProductsDistributed Embedded SystemsDevice CommunicationsIndustrial ProtocolsEthernet-Based SystemsReal-Time BehaviorMotion ControlFluidicsImagingWorkflow OrchestrationRisk Management

Qualifications

Advanced Degree+6 or Bachelor's+8 YrsComputer Science or Related Technical DegreeComplex Product Embedded Software ExperienceLinux-Based Embedded PlatformsRTOS-Based ProductsContainerized Edge EnvironmentsAgile Product Development ExperienceTravel Up to 20%

Benefits

Medical Insurance
Dental Insurance
Vision Insurance
Tuition Assistance
Paid Time Off
Parental Leave
401(k) Match

Full job description

Work Schedule

Standard (Mon-Fri)

Environmental Conditions

Office

Job Description

As part of the Thermo Fisher Scientific team, you’ll discover meaningful work that makes a positive impact on a global scale. Join our colleagues in bringing our Mission to life every single day to enable our customers to make the world healthier, cleaner and safer. We provide our global teams with the resources needed to achieve individual career goals while helping to take science a step beyond by developing solutions for some of the world’s toughest challenges, like protecting the environment, making sure our food is safe or helping find cures for cancer.

Description

Join our team as a Staff, Systems Design – System Architect at Thermo Fisher Scientific. This role provides architecture and technical leadership for embedded software that coordinates, monitors, and controls complex scientific instrument subsystems, rather than focusing primarily on low-level firmware development.

You will define and evolve the embedded software architecture for advanced scientific instruments and laboratory automation platforms. You will work across hardware, systems, application software, quality, and product teams to deliver reliable, maintainable, and scalable software solutions that enable instrument capabilities from concept through release and sustaining support.

The role focuses on embedded software design across instrument subsystems, including workflow orchestration, device communications, subsystem coordination, diagnostics, state management, error handling, data exchange, and integration with higher-level applications. You will guide technical decisions, establish architectural standards, mentor engineers, and help shape reusable software platforms across products.

Key Responsibilities

  • Lead the architecture and technical design of embedded software for complex scientific instruments and laboratory automation platforms.

  • Define software boundaries, component responsibilities, interfaces, and communication patterns across embedded subsystems, hardware controllers, and higher-level applications.

  • Translate product and system needs into clear embedded software requirements, architecture specifications, design documentation, and implementation plans.

  • Architect software for subsystem coordination, workflow execution, device communication, diagnostics, error recovery, event handling, configuration, and state management.

  • Partner with electrical, mechanical, firmware, systems, and application software teams to deliver integrated instrument capabilities.

  • Establish reusable software architectures, design patterns, coding standards, interface specifications, and technical-review practices.

  • Lead technical investigations and root-cause analysis for complex software integration, reliability, performance, and field issues.

  • Define and support software verification strategies, including unit, integration, system, simulation, and hardware-in-the-loop testing.

  • Develop or guide the development of automation and engineering tools that improve software quality, test coverage, and development efficiency.

  • Mentor embedded software engineers and provide technical leadership across product development teams.

  • Influence technical roadmaps, platform reuse strategy, and improvements to the embedded software development lifecycle.

Minimum Requirements

  • Advanced degree plus 6 years of experience, or bachelor’s degree plus 8 years of experience in embedded software development, software architecture, or complex product development.

  • Degree in Computer Science, Computer Engineering, Electrical Engineering, Software Engineering, or a related technical field.

  • Demonstrated experience architecting and delivering embedded software for complex electro-mechanical products, scientific instruments, laboratory automation, robotics, industrial systems, or comparable products.

  • Strong experience designing modular, maintainable software systems using C++, Python, and/or other relevant programming languages.

  • Experience designing software components, service interfaces, communication layers, diagnostics, error handling, and state management across distributed instrument subsystems.

  • Experience integrating embedded software with sensors, actuators, motion systems, fluidics, imaging systems, control electronics, or external devices.

  • Experience with embedded or real-time operating environments and the practical constraints of software that interfaces with hardware.

  • Experience developing automated test frameworks, integration tools, simulation environments, or hardware-in-the-loop test capabilities using Python or similar technologies.

  • Strong understanding of software design principles, API/interface design, version control, code review, continuous integration, automated testing, and release management.

  • Experience leading technical design decisions and influencing cross-functional engineering teams.

  • Strong communication, collaboration, problem-solving, and mentoring skills.

Preferred Qualifications

  • Experience with laboratory, analytical, life sciences, medical-device, automation, robotics, or other regulated products.

  • Experience with distributed embedded systems, device communications, industrial protocols, Ethernet-based systems, or software services running on instrument-connected platforms.

  • Experience with real-time behavior, motion control, fluidics, imaging, precision measurement, or workflow orchestration.

  • Familiarity with safety, risk management, cybersecurity, or regulated software-development practices.

  • Experience with Linux-based embedded platforms, RTOS-based products, or containerized/edge software environments.

  • Experience collaborating with firmware teams; hands-on device-driver, microcontroller, or low-level firmware development is beneficial but not required.

  • Experience working in Agile product development environments.

  • Ability to travel up to 20% as needed.

Compensation and Benefits

The salary range estimated for this position based in California is $135,900.00–$170,000.00.

This position may also be eligible to receive a variable annual bonus based on company, team, and/or individual performance results in accordance with company policy. We offer a comprehensive Total Rewards package that our U.S. colleagues and their families can count on, which includes:

  • A choice of national medical and dental plans, and a national vision plan, including health incentive programs

  • Employee assistance and family support programs, including commuter benefits and tuition reimbursement

  • At least 120 hours paid time off (PTO), 10 paid holidays annually, paid parental leave (3 weeks for bonding and 8 weeks for caregiver leave), accident and life insurance, and short- and long-term disability in accordance with company policy

  • Retirement and savings programs, such as our competitive 401(k) U.S. retirement savings plan

  • Employees’ Stock Purchase Plan (ESPP) offers eligible colleagues the opportunity to purchase company stock at a discount

For more information on our benefits, please visit: https://jobs.thermofisher.com/global/en/total-rewards

Thermo Fisher Scientific is an EEO/Affirmative Action Employer and does not discriminate on the basis of race, color, religion, sex, sexual orientation, gender identity, national origin, protected veteran status, disability or any other legally protected status.

How this job compares

Set against the 837 open Systems Architect jobs on Olive Jobs, counted October 31, 2026.

Pay
  • This posting$136–170K/yr
  • California median$177–288K/yr119 salary ranges
  • US median$141–230K/yr652 salary ranges

This range's midpoint, $153K, is 32% below the California median midpoint ($226K) — in the lowest quarter of Systems Architect salary ranges in California.

Openings
Olive Jobs lists 135 open Systems Architect jobs in California and 837 across the US. 12% of them nationwide are listed as remote or flexible.
Hiring the most in California
Experience
This posting asks for at least 6 years of experience; Systems Architect postings that state a minimum ask for 8 years at the median (682 postings).
Education
288 of the 837 open Systems Architect jobs (34%) ask for a bachelor's degree or higher.

Counted across the open, public US postings on Olive Jobs on October 31, 2026. Pay medians are the middle values of the low ends and of the high ends of postings that list both ends of a range in the same cadence (a yearly salary or an hourly rate); a range's midpoint is halfway between its ends. Pay and experience figures resting on fewer than 20 postings are left out.

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